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Fact Sheet Number 414

HIV RESISTANCE TESTING


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WHAT IS RESISTANCE?

HIV is “resistant” to a drug if it keeps multiplying

rapidly while you are taking the drug. Changes (mutations) in

the virus cause resistance. HIV mutates almost every time a new

copy is made. Not every mutation causes resistance. The “wild

type” virus is the most common form of HIV. Anything different

from the wild type is considered a mutation.

Antiviral drugs control most types of the virus. However, they

won’t control resistant virus. It can “escape” from

the drug. If you keep taking the drug, the resistant virus will

multiply the fastest. This is called “selective pressure.”

If you stop taking medications, there is no selective pressure.

The wild type virus will multiply the fastest. Although tests

may not detect any drug resistance, it might come back if you

re-start the same drugs.

Resistance testing helps doctors make better treatment decisions

for their patients.


HOW DOES RESISTANCE

DEVELOP?

HIV usually becomes resistant when someone is taking drugs that

don’t totally control it. However, more people are getting infected

with HIV that is already resistant to one or more anti-HIV drugs.

The more that HIV multiplies, the more mutations show up. These

mutations happen by accident. The virus doesn’t “figure out”

which mutations will resist medications.

Just one mutation can make HIV resistant to some drugs. This

is true for 3TC (Epivir) and the non-nucleoside reverse transcriptase

inhibitors (NNRTIs). However, HIV has to go through a series of

mutations to develop resistance to other drugs, including most

protease inhibitors.

The best way to prevent resistance is to control HIV by taking

strong antiviral medications. If you miss doses of your medications,

HIV will multiply more easily. More mutations will occur. Some

of them could cause resistance.

If you have to stop taking any antiviral medication,

talk to your doctor. You may have to stop some drugs sooner

than others. If you stop taking drugs while the virus us under

control, you should be able to use them again.


TYPES OF RESISTANCE

There are three types of resistance:

  • Clinical resistance: HIV multiplies rapidly in your

    body even though you’re taking antiviral drugs.

  • Phenotypic resistance: HIV multiplies in a test tube

    when antiviral drugs are added.

  • Genotypic resistance: The genetic code of HIV has

    mutations that are linked to drug resistance.

Laboratory tests can measure phenotypic and genotypic resistance.


PHENOTYPIC TESTING

A sample of HIV is grown in the laboratory. A dose of one antiviral

drug is added. The growth rate of the HIV is compared to the rate

of wild type virus. If the sample grows more than normal, it is

resistant to the medication.

Phenotypic resistance is reported as “fold” resistance.

If the test sample grows twenty times as much as normal, it has

“20-fold resistance”.

Phenotypic tests cost about $800. It used to take over a month

to get the results. New phenotypic tests are quicker.


GENOTYPIC TESTING

The genetic code of the sample virus is compared to the wild type.

The code is a long chain of molecules called nucleotides. Each

group of three nucleotides, called a “codon”, defines

a particular amino acid used to build a new virus.

Mutations are described by a combination of letters and numbers,

for example K103N. The first letter (K) is the code for the amino

acid in the wild type virus. The number (103) identifies the mutant

codon. The second letter (N) is the code for the “changed”

amino acid in the mutant sample.

Genotypic testing costs about $250. Results come back in about

two weeks.


VIRTUAL PHENOTYPE

This test combines some elements of genotypic and phenotypic

testing. First, genotypic testing is done on the sample. Phenotypic

test results for other virus samples with a similar genotypic

pattern are taken from a database. These matched samples tell

you how the virus is likely to behave. The virtual phenotype is

faster and less expensive than a phenotypic test.


CROSS-RESISTANCE

Sometimes a mutant version of HIV is resistant to more than one

drug. When this happens, the drugs are called “cross-resistant”.

For example, most HIV that is resistant to indinavir (Crixivan)

is also resistant to ritonavir (Norvir). This means that indinavir

and ritonavir are cross-resistant.

Cross-resistance is important when you change medications.

You need to choose new drugs that are not cross-resistant to drugs

you’ve already taken.

We do not totally understand cross-resistance. However, many

drugs are at least partly cross-resistant. As HIV develops more

mutations, it gets harder to control. Take every dose of

your antiviral medications according to instructions. This reduces

the risk of resistance and cross-resistance. It saves the most

options for changing medications in the future.


PROBLEMS WITH

RESISTANCE TESTING

Resistance tests are not available everywhere. They are expensive.

However, they are becoming more common, faster and cheaper.

The tests aren’t good at detecting “minority” mutations

(less than 20% of the virus population.) Also, they work better

when the viral load is higher.

If your viral load is very low, the tests might not work.

Test results can be difficult to understand. Sometimes they

don’t explain what actually happens with a patient. Drugs that

should work according to the tests sometimes don’t work, and vice

versa.

Despite these problems, many researchers believe that resistance

testing will become a normal part of HIV treatment in the next

several years. More physicians will probably use resistance testing

before choosing someone’s first antiviral medications to see if

they were infected by drug-resistant virus.


Revised July 26, 2002

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